Prep GRAND-SLAM output for bakRFnData

This function creates a fraction new estimate data frame that can be passed to bakRFnData, using main .tsv file output by GRAND-SLAM.

Usage

GSprocessing(GS, use_symbol = FALSE)

Arguments

GS

Table of read counts and NTR (fraction new) estimate parameters output by GRAND-SLAM. Corresponds to the run_name.tsv file included in GRAND-SLAM output

use_symbol

Logical; if TRUE, then Symbol column rather than Gene column is used as feature column (XF) in output data frame.

Value

A data frame that can be passed as the fns parameter to bakRFnData

Examples

# Load GRAND-SLAM table
data("GS_table")


# Create bakRData object
fns <- GSprocessing(GS_table)