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All functions

FnPCA()
Creating PCA plots with logit(fn) estimates
Heatmap_kdeg()
Creating a L2FC(kdeg) matrix that can be passed to heatmap functions
NSSHeat()
Construct heatmap for non-steady state (NSS) analysis
NSSHeat2()
Construct heatmap for non-steady state (NSS) analysis with improved mechanism score
QC_checks()
Check data quality and make suggestions to user about what analyses to run.
Simulate_bakRData()
Simulating nucleotide recoding data
TL_stan()
Fit 'Stan' models to nucleotide recoding RNA-seq data analysis
bakR-package bakR
The 'bakR' package.
bakRData()
bakR Data object helper function for users
bakRFit()
Estimating kinetic parameters from nucleotide recoding RNA-seq data
cB_small
Example cB data frame
cBprocess()
Curate data in bakRData object for statistical modeling
fast_analysis()
Efficiently analyze nucleotide recoding data
metadf
Example meatdf data frame
new_bakRData()
bakRData object constructor for internal use
plotMA()
Creating L2FC(kdeg) MA plot from fit objects
plotVolcano()
Creating L2FC(kdeg) volcano plot from fit objects
reliableFeatures()
Identify features (e.g., transcripts) with high quality data
validate_bakRData()
bakR Data object validator