Example cB data frame — cB

Subset of a cB file from the DCP2 dataset published in Luo et al. 2020. The original file is large (69 MB), so the example cB file has been downsampled and contains only 10 genes (rather than 25012). The columns are described in the Getting_Started vignette.

Usage

data(cB_small)

Format

A dataframe with 5788 rows and 5 variables; each row corresponds to a group of sequencing reads

sample: Sample name
TC: Number of T-to-C mutations
nT: Number of Ts
XF: Name of feature to which the group of reads map; usually a gene name
n: Number of identical sequencing reads

References

Luo et al. (2020) Biochemistry. 59(42), 4121-4142

Examples

data(cB_small)
data(metadf)
bakRdat <- bakRData(cB_small, metadf)